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SRX008799: 1000 Genomes Pilot 1 (aka pilot 1A)
1 ILLUMINA (Illumina Genome Analyzer II) run: 4.7M spots, 715.1M bases, 353.2Mb downloads

Design: Low Coverage WGS Sequencing on a 1000 Genomes allocated sample
Submitted by: Broad Institute (BI)
Study: 1000 Genomes Project Pilot 1 (low coverage sequencing of 180 Hapmap individuals from multiple populations.
show Abstracthide Abstract
1000 Genomes first pilot study: Low coverage sequencing of 180 individuals. <P>The purpose of the project is to support the discovery and understanding of genetic variants that influence human disease. Specifically defined goals are (a) the discovery of single nucleotide variants at frequencies of 1% or higher in diverse populations, (b) even more comprehensive discovery (variants down to frequencies of 0.1 - 0.5%) in functional gene regions, and (c) discovery of structural variants, such as copy number variants, other insertions and deletions, and inversions, including sequence-level understanding of breakpoints.</P> <P>The volume of data generated by 1000genomes project is unprecedented.</P> The data is accessible from two mirrored ftp sites at <A HREF="ftp://ftp.1000genomes.ebi.ac.uk">EBI</A> and <A HREF="ftp://ftp-trace.ncbi.nih.gov/1000genomes/">NCBI</A>.
Sample: Coriell GM18964
SAMN00001648 • SRS000166 • All experiments • All runs
Organism: Homo sapiens
Library:
Name: Solexa-5414
Instrument: Illumina Genome Analyzer II
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Spot descriptor:
forward77  reverse

Experiment attributes: (show all 4 attributes...) (hide...)
4 BI attributes: (show...)(hide...)
BI GSSR Sample ID: 25102.0
BI GSSR Sample LSID: broad.mit.edu:bsp.prod.sample:G3B2
BI Project Name: G1524
BI Work Request ID: 19328
Runs: 1 run, 4.7M spots, 715.1M bases, 353.2Mb
Run# of Spots# of BasesSizePublished
SRR0243634,704,812715.1M353.2Mb2009-09-20

ID:
9086

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